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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127128124_127129085_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127128124 - 127129085
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTATAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTATAA
Flanking Amino Acid:
VIFEMPWIMNAAFKIVKGWL
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
66.3
0.37
1.1
67.1
37.2
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
52.7
0.08
2
71.91
39.3

Associated Gene:

Gene:
MOSPD2
Ensembl Gene ID:
ENSAPLG00000013235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013798
127112793 - 127145480
32688