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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127137375_127145225_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127137375 - 127145225
Intron Length:
7851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTTACAATAATT
Flanking Amino Acid:
RRRFEAEYLPDKSDKYDSRD
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
72
0.5
1
66.6
44.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
52.2
0.15
1.9
75.07
41.5

Associated Gene:

Gene:
MOSPD2
Ensembl Gene ID:
ENSAPLG00000013235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013798
127112793 - 127145480
32688