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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127146651_127147664_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127146651 - 127147664
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
ACTTCTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTGAAACT
Flanking Amino Acid:
VCVVRSENLQVASKWQKVKS
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.1
0.52
0.8
67.4
33.1
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
49.4
0.04
2.2
75.92
41.3

Associated Gene:

Gene:
FANCB
Ensembl Gene ID:
ENSAPLG00000013141
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013682
127145745 - 127159181
13437