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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127156606_127157426_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127156606 - 127157426
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATCTTTTTACT
Flanking Amino Acid:
KMLRDNSYCTGSMEDILAVL
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90
0.9
0.7
85.2
29.1
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
61
0.43
1.6
77.92
38.5

Associated Gene:

Gene:
FANCB
Ensembl Gene ID:
ENSAPLG00000013141
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013682
127145745 - 127159181
13437