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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127190593_127192435_R

Intron Information:

Intron Rank:
131961
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
127190593 - 127192435
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACACTGG
5'SS Class:
weak_major
3'SS Sequence:
TCATTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATCTTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.1
46.8
44.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.7
0.74
0.8
77.5
31
Minor 5ss
41.7
-0.9
3.2
52.8
46.3
Minor BPS
63.8
0.43
1.4
69.08
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039778
127190420 - 127193348
2929