About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127194100_127221034_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127194100 - 127221034
Intron Length:
26935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACTT
5'SS Class:
major
3'SS Sequence:
ATTTATCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCTTTGACT
Flanking Amino Acid:
LRRRQRRQNKEDEVARDSRF
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
69
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.7
0.69
0.8
77.9
35.5
Minor 5ss
36.2
-1.6
3.6
56.6
47.5
Minor BPS
82.3
1.1
1
90.81
33.2

Associated Gene:

Gene:
GLRA2
Ensembl Gene ID:
ENSAPLG00000013072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027108
127193747 - 127321247
127501