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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127292166_127299576_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127292166 - 127299576
Intron Length:
7411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GGCATTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACCTTTTTACAT
Flanking Amino Acid:
SFGSIAETTMDYRVNIFLRQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
68.3
0.41
0.9
61.9
39.8
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
48.8
-0
1.7
62.12
42.6

Associated Gene:

Gene:
GLRA2
Ensembl Gene ID:
ENSAPLG00000013072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013615
127193747 - 127321247
127501