About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127318784_127321025_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127318784 - 127321025
Intron Length:
2242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATAATTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATAATTTATTT
Flanking Amino Acid:
FAFFLETNHFRTTFCKEHDS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
80
0.75
1
78.6
31
Major PPT
69.3
0.43
1
67.4
43.1
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
48.4
-0
1.7
65.33
39.2

Associated Gene:

Gene:
GLRA2
Ensembl Gene ID:
ENSAPLG00000013072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027108
127193747 - 127321247
127501
ENSAPLT00000020086
127193747 - 127321247
127501
ENSAPLT00000013615
127193747 - 127321247
127501