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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127357189_127377083_R

Intron Information:

Intron Rank:
154014
Intron Class:
major
Intron Phase:
Intron Coordinates:
127357189 - 127377083
Intron Length:
19895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTGATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
62.6
44.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.2
0.81
0.8
77.7
40.6
Minor 5ss
45.7
-0.5
2.9
60.2
44.7
Minor BPS
69.5
0.7
1.1
83.52
30.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030341
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027078
127357006 - 127378188
21183