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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127380127_127382818_R

Intron Information:

Intron Rank:
136458
Intron Class:
major
Intron Phase:
Intron Coordinates:
127380127 - 127382818
Intron Length:
2692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCATTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
55.1
0.16
1.4
60.21
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020833
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030368
127379871 - 127403007
23137