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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127382966_127402884_R

Intron Information:

Intron Rank:
136459
Intron Class:
major
Intron Phase:
Intron Coordinates:
127382966 - 127402884
Intron Length:
19919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020833
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030368
127379871 - 127403007
23137