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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1274052_1276359_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1274052 - 1276359
Intron Length:
2308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATGGGACC
Flanking Amino Acid:
VNYSAVTDGEVEQNWATLQG
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.6
0.62
0.7
73.5
24.6
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
42.7
-0.5
2.2
60.87
38.4

Associated Gene:

Gene:
NRF1
Ensembl Gene ID:
ENSAPLG00000003164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003275
1266696 - 1289780
23085
ENSAPLT00000047126
1267098 - 1289780
22683
ENSAPLT00000042267
1268512 - 1289780
21269