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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127436672_127437378_F

Intron Information:

Intron Rank:
143145
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
127436672 - 127437378
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AC
5'SS Sequence:
GAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CATTTGCCCACAC|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTATTATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
41
-0.5
3.2
57.4
38.4
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
45
-0.3
1.9
65.53
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031359
127435914 - 127444658
8745