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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127437510_127444473_F

Intron Information:

Intron Rank:
143146
Intron Class:
major
Intron Phase:
Intron Coordinates:
127437510 - 127444473
Intron Length:
6964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTCTCTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
89.5
0.89
0.6
84.3
23.7
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
55.3
0.16
1.9
73.04
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031359
127435914 - 127444658
8745