About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127485465_127487311_R

Intron Information:

Intron Rank:
137852
Intron Class:
major
Intron Phase:
Intron Coordinates:
127485465 - 127487311
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTTCATAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
54.1
0.21
1.9
74.93
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018782
127485101 - 127487531
2431