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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127486580_127487311_R

Intron Information:

Intron Rank:
137853
Intron Class:
major
Intron Phase:
Intron Coordinates:
127486580 - 127487311
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
CACATTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATTGCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
69.6
0.44
0.8
66.3
35.3
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
53.2
0.18
1.9
75.4
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028885
127486238 - 127487531
1294
ENSAPLT00000022789
127486485 - 127522754
36270
ENSAPLT00000033673
127486485 - 127488118
1634