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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127487488_127487998_R

Intron Information:

Intron Rank:
137857
Intron Class:
major
Intron Phase:
Intron Coordinates:
127487488 - 127487998
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCCAT
5'SS Class:
major
3'SS Sequence:
TTTTCTGGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGTT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
67
40
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
77.3
0.61
1
76.7
37.4
Minor 5ss
36.5
-1.5
3.3
52
44.9
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033673
127486485 - 127488118
1634