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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127563705_127567276_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
127563705 - 127567276
Intron Length:
3572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTCTATGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
50.6
0.1
1.7
71.14
39.8

Associated Gene:

Gene:
GEMIN8
Ensembl Gene ID:
ENSAPLG00000021699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026370
127562098 - 127586895
24798
ENSAPLT00000019254
127562098 - 127586404
24307
ENSAPLT00000042208
127563318 - 127586895
23578