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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127570526_127586042_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127570526 - 127586042
Intron Length:
15517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTATTTATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATCT
Flanking Amino Acid:
AQTERHREELRRQQQLEAEQ
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.4
63.6
48.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.9
74.4
40.4
Minor 5ss
38.8
-1.3
3
45.9
42.4
Minor BPS
62.5
0.47
1.8
81.72
39.6

Associated Gene:

Gene:
GEMIN8
Ensembl Gene ID:
ENSAPLG00000021699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019254
127562098 - 127586404
24307
ENSAPLT00000042208
127563318 - 127586895
23578
ENSAPLT00000026370
127562098 - 127586895
24798