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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127603078_127696459_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127603078 - 127696459
Intron Length:
93382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTGCTCATAACA
Flanking Amino Acid:
VSGASQCGFTGCFECCIKCL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
72.7
0.51
0.8
72.6
32.2
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
62.5
0.39
1.6
73.56
37.9

Associated Gene:

Gene:
GPM6B
Ensembl Gene ID:
ENSAPLG00000013046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013589
127603035 - 127708073
105039