About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127603734_127699757_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127603734 - 127699757
Intron Length:
96024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
RAPHGESQPWNTANAVCNLW
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
58
47.1
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
35.3
-1.7
3.3
38.2
46.7
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
GPM6B
Ensembl Gene ID:
ENSAPLG00000013046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045722
127603179 - 127708073
104895