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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127696647_127699757_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127696647 - 127699757
Intron Length:
3111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
TASDHALLSEVIQLMQYVIY
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
GPM6B
Ensembl Gene ID:
ENSAPLG00000013046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013589
127603035 - 127708073
105039
ENSAPLT00000030705
127678340 - 127705976
27637
ENSAPLT00000025475
127603265 - 127706364
103100
ENSAPLT00000021012
127603730 - 127706364
102635
ENSAPLT00000046435
127678340 - 127708073
29734
ENSAPLT00000020637
127678340 - 127706367
28028
ENSAPLT00000037038
127678340 - 127708073
29734