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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127699915_127702984_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127699915 - 127702984
Intron Length:
3070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CAAATATGAAGT
Flanking Amino Acid:
TACGRCISGMFVFLTYVLGV
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.2
0.66
0.9
72.9
37.4
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
41.4
-0.5
1.9
52.66
41.5

Associated Gene:

Gene:
GPM6B
Ensembl Gene ID:
ENSAPLG00000013046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025475
127603265 - 127706364
103100
ENSAPLT00000021012
127603730 - 127706364
102635
ENSAPLT00000046435
127678340 - 127708073
29734
ENSAPLT00000020637
127678340 - 127706367
28028
ENSAPLT00000037038
127678340 - 127708073
29734
ENSAPLT00000013589
127603035 - 127708073
105039
ENSAPLT00000030705
127678340 - 127705976
27637