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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127703157_127703787_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127703157 - 127703787
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTTATT
5'SS Class:
major
3'SS Sequence:
CCTTCTGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTGTGCTGAAAA
Flanking Amino Acid:
DQICVDIRQYVTLGFISACI
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
75.2
40.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.8
0.6
0.8
71
33.3
Minor 5ss
41.1
-1
3.1
60.6
43.9
Minor BPS
48.6
-0.1
2
61.29
44.6

Associated Gene:

Gene:
GPM6B
Ensembl Gene ID:
ENSAPLG00000013046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020637
127678340 - 127706367
28028