Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127705174_127705500_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

127705174 - 127705500

Intron Length:

327

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACACAGG

5'SS Class:

major

3'SS Sequence:

CTTTTTCCCCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ACGTTTTTAACA

Flanking Amino Acid:

ILENICNTNEFYMSYHLFIV

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.9

0.45

1.1

57.1

47.4

Major BPS

100

1.24

0.5

100

Major PPT

80.2

0.68

0.7

73.9

31.3

Minor 5ss

37.1

-1.5

3.2

48.9

46.9

Minor BPS

68.8

0.59

1.2

68.54

38.5

Associated Gene:

Gene:

GPM6B

Ensembl Gene ID:

ENSAPLG00000013046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025475

127603265 - 127706364

103100

ENSAPLT00000046435

127678340 - 127708073

29734

ENSAPLT00000021012

127603730 - 127706364

102635

ENSAPLT00000045722

127603179 - 127708073

104895

ENSAPLT00000020637

127678340 - 127706367

28028

ENSAPLT00000037038

127678340 - 127708073

29734

ENSAPLT00000013589

127603035 - 127708073

105039

ENSAPLT00000030705

127678340 - 127705976

27637