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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127705567_127706283_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
127705567 - 127706283
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTAGC
5'SS Class:
major
3'SS Sequence:
TCTCTTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGTTTCTTACTC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
64.9
41.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77
0.61
0.8
70.7
34.8
Minor 5ss
29.4
-2.4
2.9
33
36.9
Minor BPS
66.4
0.49
1.6
74.33
36.8

Associated Gene:

Gene:
GPM6B
Ensembl Gene ID:
ENSAPLG00000013046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020637
127678340 - 127706367
28028
ENSAPLT00000025475
127603265 - 127706364
103100
ENSAPLT00000021012
127603730 - 127706364
102635