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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127705567_127707923_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127705567 - 127707923
Intron Length:
2357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTAGC
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TCATGCTCACCC
Flanking Amino Acid:
AGAGATVIALIHFLMILSSN
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
64.9
41.1
Major BPS
67.6
0.44
1.2
75
40
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
29.4
-2.4
2.9
33
36.9
Minor BPS
46.1
-0.3
2.2
59.12
45.7

Associated Gene:

Gene:
GPM6B
Ensembl Gene ID:
ENSAPLG00000013046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013589
127603035 - 127708073
105039
ENSAPLT00000046435
127678340 - 127708073
29734
ENSAPLT00000045722
127603179 - 127708073
104895
ENSAPLT00000037038
127678340 - 127708073
29734