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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12770905_12774486_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12770905 - 12774486
Intron Length:
3582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTGCTCTAATA
Flanking Amino Acid:
VSLDFIRAIARTVNFDIIKY
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.4
37.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
32.8
-2
3
42
44.5
Minor BPS
57.3
0.23
1.7
70.03
36.7

Associated Gene:

Gene:
ORC5
Ensembl Gene ID:
ENSAPLG00000002905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024455
12770816 - 12839172
68357
ENSAPLT00000002989
12770816 - 12839172
68357