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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127712148_127712777_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127712148 - 127712777
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CTTTCTGTAACT
Flanking Amino Acid:
EQGEQELAHKDSKKEEIKEI
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
88.8
24.7
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
69.2
0.43
1.1
61.5
44.5
Minor 5ss
36.3
-1.6
2.9
51.2
45.3
Minor BPS
67.9
0.64
2
87.23
39

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297