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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127725854_127726230_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127725854 - 127726230
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGAATTATAT
Flanking Amino Acid:
QFLEKQLQSEVERAAQLKTQ
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.2
0.68
0.9
77.5
36.9
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
46
-0.2
2.1
71.64
44.5

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297