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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127726362_127727038_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127726362 - 127727038
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TCTTTTTGGAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCTTTTTGGAAA
Flanking Amino Acid:
TRSENQHLRDKLSQPSVEHL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
66.3
39.5
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
65.5
0.35
1.2
70.2
39.4
Minor 5ss
33
-1.9
3.3
45.7
43.5
Minor BPS
49.8
-0
1.6
63.06
37.3

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297