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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127727229_127727406_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127727229 - 127727406
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGCTTCTAAACT
Flanking Amino Acid:
QAVSRTKELELDLESVKAQV
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
92.2
0.95
0.6
88.3
21.3
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
61.7
0.44
1.7
74.4
42.5

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297