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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127728253_127730856_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127728253 - 127730856
Intron Length:
2604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTACTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACTT
Flanking Amino Acid:
YDQKLKTELLKYQLELKEEY
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
83.5
28.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.8
0.7
78.7
34.8
Minor 5ss
47.9
-0.2
2.8
67.6
37.2
Minor BPS
63.3
0.49
1.6
78.3
39.3

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297