About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127730977_127731826_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127730977 - 127731826
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATGATTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGATTATTT
Flanking Amino Acid:
ELKQRIEAFEITQKLQEEKN
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.7
0.56
1
71
43.6
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
48.6
-0
2.2
73.9
43.1

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297