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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127737422_127737506_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127737422 - 127737506
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCTTTTATTT
Flanking Amino Acid:
NPKSNFYKLLTLGTQKENKG
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.3
0.88
0.7
84.4
30.3
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
57
0.3
1.5
73.36
38

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297