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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127737576_127738455_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127737576 - 127738455
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCTAAAAG
Flanking Amino Acid:
FPESGLEKKKLLSVQDLLQL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.8
0.53
1
76.5
31.1
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
68.4
0.44
1.8
76.73
40.6

Associated Gene:

Gene:
OFD1
Ensembl Gene ID:
ENSAPLG00000012863
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013425
127711028 - 127741324
30297