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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127744631_127745271_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127744631 - 127745271
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTGTGCTTATTT
Flanking Amino Acid:
FNDVYELYIKFAMNPFYELN
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
85.2
0.79
0.7
84.2
23.7
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
58.9
0.36
2
79.35
43.5

Associated Gene:

Gene:
TRAPPC2B
Ensembl Gene ID:
ENSAPLG00000030870
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040863
127741425 - 127745434
4010
ENSAPLT00000022951
127741664 - 127745434
3771