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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127789186_127790380_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127789186 - 127790380
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCCTTATGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTCCTTATGA
Flanking Amino Acid:
IFQGAETTNTITFESERGKG
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.7
0.58
1
72.6
36.4
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
62.7
0.39
1.9
74.85
43.1

Associated Gene:

Gene:
EGFL6
Ensembl Gene ID:
ENSAPLG00000012810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013350
127788533 - 127830619
42087