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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127793362_127795425_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127793362 - 127795425
Intron Length:
2064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTGTCTCCATT
Flanking Amino Acid:
KVPVSRPEQEVDCSFSRGVC
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
34.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
40.9
-1
3.1
58.4
46.1
Minor BPS
46.9
-0.1
2
68.05
43.4

Associated Gene:

Gene:
EGFL6
Ensembl Gene ID:
ENSAPLG00000012810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013350
127788533 - 127830619
42087