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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127795507_127806307_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127795507 - 127806307
Intron Length:
10801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTGTTTTCACCA
Flanking Amino Acid:
HERSLRGDVFFPQGKEAAAF
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
84.6
0.86
1
74
41.2
Major PPT
80.1
0.68
0.9
74.7
40
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
51.3
0.04
1.8
66.45
40.7

Associated Gene:

Gene:
EGFL6
Ensembl Gene ID:
ENSAPLG00000012810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013350
127788533 - 127830619
42087