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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127816621_127818243_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127816621 - 127818243
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAAGG
Flanking Amino Acid:
KYISGHYDCVDVNECVANTH
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.5
0.6
0.8
69.9
35.9
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
50.8
-0.1
2.3
69.51
43.4

Associated Gene:

Gene:
EGFL6
Ensembl Gene ID:
ENSAPLG00000012810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013350
127788533 - 127830619
42087