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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127821854_127825015_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127821854 - 127825015
Intron Length:
3162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
YMLMPDGTCASSRTCAMANC
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84
0.76
0.8
81
36
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
EGFL6
Ensembl Gene ID:
ENSAPLG00000012810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013350
127788533 - 127830619
42087