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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127825136_127827975_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
127825136 - 127827975
Intron Length:
2840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGCT
5'SS Class:
major
3'SS Sequence:
ATGAATTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATCATCTAATT
Flanking Amino Acid:
PGFTGKTCNQDLNECGLKPR
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1.1
72.6
36.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
70.3
0.46
1
62.8
43.2
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
48.3
-0
1.8
67.13
37.1

Associated Gene:

Gene:
EGFL6
Ensembl Gene ID:
ENSAPLG00000012810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013350
127788533 - 127830619
42087