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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127917041_127919703_R

Intron Information:

Intron Rank:
141421
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
127917041 - 127919703
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CAAAAACCTACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
58.1
0.18
1
47.6
39.8
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
67.4
0.62
1.6
84.98
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035510
127914218 - 127920048
5831