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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127925553_127925870_F

Intron Information:

Intron Rank:
138955
Intron Class:
major
Intron Phase:
Intron Coordinates:
127925553 - 127925870
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTAGT
5'SS Class:
major
3'SS Sequence:
TTGTCTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTGTCTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.7
44.5
Major BPS
66.3
0.41
1
61
37.5
Major PPT
76.4
0.59
0.9
73.8
35.6
Minor 5ss
35.6
-1.6
3.1
42.2
44.7
Minor BPS
81.2
0.98
1
82.79
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038071
127925407 - 127926808
1402