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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127926039_127926628_F

Intron Information:

Intron Rank:
138956
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
127926039 - 127926628
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
GTTTCAAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
53.7
0.09
1.7
66.9
39.3
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
46.4
-0.1
2.2
72.73
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038071
127925407 - 127926808
1402