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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127929362_127939689_F

Intron Information:

Intron Rank:
138952
Intron Class:
major
Intron Phase:
Intron Coordinates:
127929362 - 127939689
Intron Length:
10328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.2
0.61
1
78.1
39.9
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033109
127929264 - 127940179
10916
ENSAPLT00000034748
127928985 - 127941752
12768