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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127946007_127975352_F

Intron Information:

Intron Rank:
127114
Intron Class:
major
Intron Phase:
Intron Coordinates:
127946007 - 127975352
Intron Length:
29346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
65.6
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
34.9
-1.7
3.3
50
46.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030478
127945192 - 127978176
32985