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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127981654_127984333_F

Intron Information:

Intron Rank:
131453
Intron Class:
major
Intron Phase:
Intron Coordinates:
127981654 - 127984333
Intron Length:
2680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTATTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.9
0.72
0.8
76.4
37
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044617
127980833 - 127984464
3632