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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_128072487_128074377_F

Intron Information:

Intron Rank:
124265
Intron Class:
major
Intron Phase:
Intron Coordinates:
128072487 - 128074377
Intron Length:
1891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTATGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTTCCTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
82.7
30.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.1
0.72
0.9
76.5
37.3
Minor 5ss
40.2
-1.1
3.1
57
47.2
Minor BPS
50.9
0.11
2.2
80
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016995
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022280
128071530 - 128075306
3777